J4_9QQP_004

3D structure

PDB id

9QQP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mouse Ribosome rotated-2 PRE state

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

(OMC)AAAUAU*AGG*(OMC)AUGUU*AG

Length

18 nucleotides

Bulged bases

9QQP|1|A2|A|2121, 9QQP|1|A2|U|2124, 9QQP|1|A2|U|2583

QA status

Modified nucleotides: OMC

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9QQP|1|A2|OMC|2120
9QQP|1|A2|A|2121
9QQP|1|A2|A|2122
9QQP|1|A2|A|2123
9QQP|1|A2|U|2124
9QQP|1|A2|A|2125
9QQP|1|A2|U|2126
*
9QQP|1|A2|A|2144
9QQP|1|A2|G|2145
9QQP|1|A2|G|2146
*
9QQP|1|A2|OMC|2579
9QQP|1|A2|A|2580
9QQP|1|A2|U|2581
9QQP|1|A2|G|2582
9QQP|1|A2|U|2583
9QQP|1|A2|U|2584
*
9QQP|1|A2|A|3512
9QQP|1|A2|G|3513

Current chains

Chain A2

28S ribosomal RNA

Nearby chains

Chain J2

Large ribosomal subunit protein uL22

Chain L2

Large ribosomal subunit protein eL19

Chain X2

Large ribosomal subunit protein eL31