J4_9QQP_007

3D structure

PDB id

9QQP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mouse Ribosome rotated-2 PRE state

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

GACUG*CAAAG*UGAUU*AUGA(A2M)C

Length

21 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: A2M

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9QQP|1|A2|G|3290
9QQP|1|A2|A|3291
9QQP|1|A2|C|3292
9QQP|1|A2|U|3293
9QQP|1|A2|G|3294
*
9QQP|1|A2|C|3306
9QQP|1|A2|A|3307
9QQP|1|A2|A|3308
9QQP|1|A2|A|3309
9QQP|1|A2|G|3310
*
9QQP|1|A2|U|3346
9QQP|1|A2|G|3347
9QQP|1|A2|A|3348
9QQP|1|A2|U|3349
9QQP|1|A2|U|3350
*
9QQP|1|A2|A|3477
9QQP|1|A2|U|3478
9QQP|1|A2|G|3479
9QQP|1|A2|A|3480
9QQP|1|A2|A2M|3481
9QQP|1|A2|C|3482

Current chains

Chain A2

28S ribosomal RNA

Nearby chains

Chain D2

Large ribosomal subunit protein uL2

Chain h2

60S ribosomal protein L41

Chain j2

Large ribosomal subunit protein eL43

Chain m2

Small subunit ribosomal RNA; SSU rRNA