J4_9QQP_008

3D structure

PDB id

9QQP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mouse Ribosome rotated-2 PRE state

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

CUG*CG*CUUAAGGUAG*UGAA(OMU)G

Length

21 nucleotides

Bulged bases

9QQP|1|A2|U|3429, 9QQP|1|A2|OMU|3474

QA status

Modified nucleotides: OMU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9QQP|1|A2|C|3352
9QQP|1|A2|U|3353
9QQP|1|A2|G|3354
*
9QQP|1|A2|C|3408
9QQP|1|A2|G|3409
*
9QQP|1|A2|C|3427
9QQP|1|A2|U|3428
9QQP|1|A2|U|3429
9QQP|1|A2|A|3430
9QQP|1|A2|A|3431
9QQP|1|A2|G|3432
9QQP|1|A2|G|3433
9QQP|1|A2|U|3434
9QQP|1|A2|A|3435
9QQP|1|A2|G|3436
*
9QQP|1|A2|U|3470
9QQP|1|A2|G|3471
9QQP|1|A2|A|3472
9QQP|1|A2|A|3473
9QQP|1|A2|OMU|3474
9QQP|1|A2|G|3475

Current chains

Chain A2

28S ribosomal RNA

Nearby chains

Chain D2

Large ribosomal subunit protein uL2

Chain h2

60S ribosomal protein L41

Chain m2

Small subunit ribosomal RNA; SSU rRNA

Chain n2

Transfer RNA; tRNA