J4_9QQP_009

3D structure

PDB id

9QQP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mouse Ribosome rotated-2 PRE state

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

CUAAG*UUG*CC*GGG

Length

13 nucleotides

Bulged bases

9QQP|1|A2|A|3886

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9QQP|1|A2|C|3883
9QQP|1|A2|U|3884
9QQP|1|A2|A|3885
9QQP|1|A2|A|3886
9QQP|1|A2|G|3887
*
9QQP|1|A2|U|3941
9QQP|1|A2|U|3942
9QQP|1|A2|G|3943
*
9QQP|1|A2|C|3970
9QQP|1|A2|C|3971
*
9QQP|1|A2|G|3980
9QQP|1|A2|G|3981
9QQP|1|A2|G|3982

Current chains

Chain A2

28S ribosomal RNA

Nearby chains

Chain G2

Large ribosomal subunit protein uL18

Chain N2

Large ribosomal subunit protein eL21

Chain i2

Large ribosomal subunit protein eL42