J4_9QQP_013
3D structure
- PDB id
- 9QQP (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Mouse Ribosome rotated-2 PRE state
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.8 Å
Loop
- Sequence
- AAG*CGAAAG*CCA(PSU)AAACGAUG*UU
- Length
- 23 nucleotides
- Bulged bases
- 9QQP|1|m2|A|674, 9QQP|1|m2|A|1085, 9QQP|1|m2|C|1087, 9QQP|1|m2|A|1089
- QA status
- Modified nucleotides: PSU
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
9QQP|1|m2|A|673
9QQP|1|m2|A|674
9QQP|1|m2|G|675
*
9QQP|1|m2|C|1034
9QQP|1|m2|G|1035
9QQP|1|m2|A|1036
9QQP|1|m2|A|1037
9QQP|1|m2|A|1038
9QQP|1|m2|G|1039
*
9QQP|1|m2|C|1080
9QQP|1|m2|C|1081
9QQP|1|m2|A|1082
9QQP|1|m2|PSU|1083
9QQP|1|m2|A|1084
9QQP|1|m2|A|1085
9QQP|1|m2|A|1086
9QQP|1|m2|C|1087
9QQP|1|m2|G|1088
9QQP|1|m2|A|1089
9QQP|1|m2|U|1090
9QQP|1|m2|G|1091
*
9QQP|1|m2|U|1162
9QQP|1|m2|U|1163
Current chains
- Chain m2
- 18S ribosomal RNA
Nearby chains
- Chain A2
- Large subunit ribosomal RNA; LSU rRNA
- Chain E3
- Small ribosomal subunit protein uS12
- Chain F3
- Small ribosomal subunit protein eS26
- Chain N3
- Small ribosomal subunit protein uS15
- Chain O3
- Small ribosomal subunit protein uS11
- Chain P3
- Small ribosomal subunit protein uS8
- Chain h2
- 60S ribosomal protein L41
- Chain j2
- Large ribosomal subunit protein eL43
- Chain w2
- Small ribosomal subunit protein uS17
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