J4_9QQQ_010
3D structure
- PDB id
- 9QQQ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of SKM-70S ribosomal stalled complex in the major state (vacant A-site, canon)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.26 Å
Loop
- Sequence
- GGUUC*GGUGAG*CU*AAUCGUAC
- Length
- 21 nucleotides
- Bulged bases
- 9QQQ|1|a|G|1341
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_9QQQ_010 not in the Motif Atlas
- Homologous match to J4_7A0S_005
- Geometric discrepancy: 0.2102
- The information below is about J4_7A0S_005
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_77353.2
- Basepair signature
- cWW-F-cWW-F-tHW-F-cWW-F-F-F-F-F-cWW-cWW
- Number of instances in this motif group
- 9
Unit IDs
9QQQ|1|a|G|1310
9QQQ|1|a|G|1311
9QQQ|1|a|U|1312
9QQQ|1|a|U|1313
9QQQ|1|a|C|1314
*
9QQQ|1|a|G|1338
9QQQ|1|a|G|1339
9QQQ|1|a|U|1340
9QQQ|1|a|G|1341
9QQQ|1|a|A|1342
9QQQ|1|a|G|1343
*
9QQQ|1|a|C|1404
9QQQ|1|a|U|1405
*
9QQQ|1|a|A|1597
9QQQ|1|a|A|1598
9QQQ|1|a|U|1599
9QQQ|1|a|C|1600
9QQQ|1|a|G|1601
9QQQ|1|a|U|1602
9QQQ|1|a|A|1603
9QQQ|1|a|C|1604
Current chains
- Chain a
- E. coli 23S rRNA
Nearby chains
- Chain 1
- Large ribosomal subunit protein bL34
- Chain s
- Large ribosomal subunit protein uL23
Coloring options: