J4_9QQQ_016
3D structure
- PDB id
- 9QQQ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of SKM-70S ribosomal stalled complex in the major state (vacant A-site, canon)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.26 Å
Loop
- Sequence
- GGGC*GAC*GGAAG*UGC
- Length
- 15 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_9QQQ_016 not in the Motif Atlas
- Homologous match to J4_8B0X_014
- Geometric discrepancy: 0.0395
- The information below is about J4_8B0X_014
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_77044.5
- Basepair signature
- cWW-F-tHS-F-cWW-cWW-cWW-F-cWW
- Number of instances in this motif group
- 3
Unit IDs
9QQQ|1|a|G|2643
9QQQ|1|a|G|2644
9QQQ|1|a|G|2645
9QQQ|1|a|C|2646
*
9QQQ|1|a|G|2674
9QQQ|1|a|A|2675
9QQQ|1|a|C|2676
*
9QQQ|1|a|G|2731
9QQQ|1|a|G|2732
9QQQ|1|a|A|2733
9QQQ|1|a|A|2734
9QQQ|1|a|G|2735
*
9QQQ|1|a|U|2769
9QQQ|1|a|G|2770
9QQQ|1|a|C|2771
Current chains
- Chain a
- E. coli 23S rRNA
Nearby chains
- Chain d
- Large ribosomal subunit protein uL3
- Chain i
- Large ribosomal subunit protein uL13
- Chain j
- Large ribosomal subunit protein uL14
Coloring options: