J4_9QQQ_016

3D structure

PDB id

9QQQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of SKM-70S ribosomal stalled complex in the major state (vacant A-site, canon)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.26 Å

Loop

Sequence

GGGC*GAC*GGAAG*UGC

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9QQQ|1|a|G|2643
9QQQ|1|a|G|2644
9QQQ|1|a|G|2645
9QQQ|1|a|C|2646
*
9QQQ|1|a|G|2674
9QQQ|1|a|A|2675
9QQQ|1|a|C|2676
*
9QQQ|1|a|G|2731
9QQQ|1|a|G|2732
9QQQ|1|a|A|2733
9QQQ|1|a|A|2734
9QQQ|1|a|G|2735
*
9QQQ|1|a|U|2769
9QQQ|1|a|G|2770
9QQQ|1|a|C|2771

Current chains

Chain a

E. coli 23S rRNA

Nearby chains

Chain d

Large ribosomal subunit protein uL3

Chain i

Large ribosomal subunit protein uL13

Chain j

Large ribosomal subunit protein uL14