J4_9QSJ_002

3D structure

PDB id

9QSJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of SKM-70S ribosomal stalled complex in the A-tRNA positioned (Body open) state.

Experimental method

ELECTRON MICROSCOPY

Resolution

2.62 Å

Loop

Sequence

GAG*CAUAACG*CCAAAG*UGC

Length

19 nucleotides

Bulged bases

9QSJ|1|A|C|183

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9QSJ|1|A|G|142
9QSJ|1|A|A|143
9QSJ|1|A|G|144
*
9QSJ|1|A|C|178
9QSJ|1|A|A|179
9QSJ|1|A|U|180
9QSJ|1|A|A|181
9QSJ|1|A|A|182
9QSJ|1|A|C|183
9QSJ|1|A|G|184
*
9QSJ|1|A|C|193
9QSJ|1|A|C|194
9QSJ|1|A|A|195
9QSJ|1|A|A|196
9QSJ|1|A|A|197
9QSJ|1|A|G|198
*
9QSJ|1|A|U|219
9QSJ|1|A|G|220
9QSJ|1|A|C|221

Current chains

Chain A

E. coli 16S rRNA

Nearby chains

Chain T

Small ribosomal subunit protein bS20