J4_9QSJ_004

3D structure

PDB id

9QSJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of SKM-70S ribosomal stalled complex in the A-tRNA positioned (Body open) state.

Experimental method

ELECTRON MICROSCOPY

Resolution

2.62 Å

Loop

Sequence

GUGG*CAG*CCGUG*CC

Length

14 nucleotides

Bulged bases

9QSJ|1|Y|U|8, 9QSJ|1|Y|U|57

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_9QSJ_004 not in the Motif Atlas

Homologous match to J4_3EPH_001

Geometric discrepancy: 0.5763

The information below is about J4_3EPH_001

Detailed Annotation

tRNA junction

Broad Annotation

No text annotation

Motif group

J4_95067.1

Basepair signature

cWW-F-cWW-cWW-cHS-F-cWW-cWW

Number of instances in this motif group

48

Unit IDs

9QSJ|1|Y|G|7
9QSJ|1|Y|U|8
9QSJ|1|Y|G|9
9QSJ|1|Y|G|10
*
9QSJ|1|Y|C|26
9QSJ|1|Y|A|27
9QSJ|1|Y|G|28
*
9QSJ|1|Y|C|44
9QSJ|1|Y|C|45
9QSJ|1|Y|G|46
9QSJ|1|Y|U|57
9QSJ|1|Y|G|58
*
9QSJ|1|Y|C|74
9QSJ|1|Y|C|75

Current chains

Chain Y

A-site tRNA-Leu

Nearby chains

Chain a

Large subunit ribosomal RNA; LSU rRNA