J4_9QSJ_016

3D structure

PDB id

9QSJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of SKM-70S ribosomal stalled complex in the A-tRNA positioned (Body open) state.

Experimental method

ELECTRON MICROSCOPY

Resolution

2.62 Å

Loop

Sequence

GGGC*GAC*GGAAG*UGC

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9QSJ|1|a|G|2643
9QSJ|1|a|G|2644
9QSJ|1|a|G|2645
9QSJ|1|a|C|2646
*
9QSJ|1|a|G|2674
9QSJ|1|a|A|2675
9QSJ|1|a|C|2676
*
9QSJ|1|a|G|2731
9QSJ|1|a|G|2732
9QSJ|1|a|A|2733
9QSJ|1|a|A|2734
9QSJ|1|a|G|2735
*
9QSJ|1|a|U|2769
9QSJ|1|a|G|2770
9QSJ|1|a|C|2771

Current chains

Chain a

E. coli 23S rRNA

Nearby chains

Chain d

Large ribosomal subunit protein uL3

Chain i

Large ribosomal subunit protein uL13

Chain j

Large ribosomal subunit protein uL14