J4_9QWT_003

3D structure

PDB id

9QWT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mouse Ribosome RPS15 (uS19) P131S rotated-2 PRE state

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CUC*GCCGG*CGGUCAC*GAAGCCG

Length

22 nucleotides

Bulged bases

9QWT|1|A2|G|1063, 9QWT|1|A2|C|1085, 9QWT|1|A2|C|1086

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9QWT|1|A2|C|881
9QWT|1|A2|U|882
9QWT|1|A2|C|883
*
9QWT|1|A2|G|925
9QWT|1|A2|C|926
9QWT|1|A2|C|927
9QWT|1|A2|G|928
9QWT|1|A2|G|929
*
9QWT|1|A2|C|1062
9QWT|1|A2|G|1063
9QWT|1|A2|G|1064
9QWT|1|A2|U|1065
9QWT|1|A2|C|1066
9QWT|1|A2|A|1067
9QWT|1|A2|C|1068
*
9QWT|1|A2|G|1081
9QWT|1|A2|A|1082
9QWT|1|A2|A|1083
9QWT|1|A2|G|1084
9QWT|1|A2|C|1085
9QWT|1|A2|C|1086
9QWT|1|A2|G|1087

Current chains

Chain A2

28S ribosomal RNA

Nearby chains

Chain A1

Large ribosomal subunit protein uL30

Chain F2

Large ribosomal subunit protein uL4

Chain H2

Large ribosomal subunit protein eL6

Chain V2

Large ribosomal subunit protein eL29