J4_9QWT_008

3D structure

PDB id

9QWT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mouse Ribosome RPS15 (uS19) P131S rotated-2 PRE state

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CUG*CG*CUUAAGGUAG*UGAA(OMU)G

Length

21 nucleotides

Bulged bases

9QWT|1|A2|U|3429, 9QWT|1|A2|OMU|3474

QA status

Modified nucleotides: OMU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9QWT|1|A2|C|3352
9QWT|1|A2|U|3353
9QWT|1|A2|G|3354
*
9QWT|1|A2|C|3408
9QWT|1|A2|G|3409
*
9QWT|1|A2|C|3427
9QWT|1|A2|U|3428
9QWT|1|A2|U|3429
9QWT|1|A2|A|3430
9QWT|1|A2|A|3431
9QWT|1|A2|G|3432
9QWT|1|A2|G|3433
9QWT|1|A2|U|3434
9QWT|1|A2|A|3435
9QWT|1|A2|G|3436
*
9QWT|1|A2|U|3470
9QWT|1|A2|G|3471
9QWT|1|A2|A|3472
9QWT|1|A2|A|3473
9QWT|1|A2|OMU|3474
9QWT|1|A2|G|3475

Current chains

Chain A2

28S ribosomal RNA

Nearby chains

Chain D2

Large ribosomal subunit protein uL2

Chain h2

60S ribosomal protein L41

Chain m2

Small subunit ribosomal RNA; SSU rRNA

Chain n2

Transfer RNA; tRNA