J4_9QWT_013

3D structure

PDB id

9QWT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mouse Ribosome RPS15 (uS19) P131S rotated-2 PRE state

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GUGG*UGC*GAGGCG*CC

Length

15 nucleotides

Bulged bases

9QWT|1|n2|U|8, 9QWT|1|n2|C|47

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_9QWT_013 not in the Motif Atlas

Homologous match to J4_6UFG_001

Geometric discrepancy: 0.208

The information below is about J4_6UFG_001

Detailed Annotation

tRNA junction

Broad Annotation

No text annotation

Motif group

J4_95067.2

Basepair signature

cWW-F-cWW-cWW-cHS-F-cWW-cWW

Number of instances in this motif group

49

Unit IDs

9QWT|1|n2|G|7
9QWT|1|n2|U|8
9QWT|1|n2|G|9
9QWT|1|n2|G|10
*
9QWT|1|n2|U|24
9QWT|1|n2|G|25
9QWT|1|n2|C|26
*
9QWT|1|n2|G|42
9QWT|1|n2|A|43
9QWT|1|n2|G|44
9QWT|1|n2|G|45
9QWT|1|n2|C|47
9QWT|1|n2|G|48
*
9QWT|1|n2|C|64
9QWT|1|n2|C|65

Current chains

Chain n2

transfer RNA

Nearby chains

Chain A2

Large subunit ribosomal RNA; LSU rRNA

Chain i2

Large ribosomal subunit protein eL42

Chain m2

Small subunit ribosomal RNA; SSU rRNA