J4_9R9P_001

3D structure

PDB id

9R9P (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast 80S with nascent chain in complex with Ssb1-ADP in the S2 state

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

GUAGC*GCGU*AAGGUCG*CC

Length

18 nucleotides

Bulged bases

9R9P|1|6|U|8, 9R9P|1|6|G|10, 9R9P|1|6|U|47, 9R9P|1|6|C|48

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_9R9P_001 not in the Motif Atlas

Homologous match to J4_6CFJ_015

Geometric discrepancy: 0.4409

The information below is about J4_6CFJ_015

Detailed Annotation

tRNA junction

Broad Annotation

No text annotation

Motif group

J4_95067.1

Basepair signature

cWW-F-cWW-cWW-cHS-F-cWW-cWW

Number of instances in this motif group

48

Unit IDs

9R9P|1|6|G|7
9R9P|1|6|U|8
9R9P|1|6|A|9
9R9P|1|6|G|10
9R9P|1|6|C|11
*
9R9P|1|6|G|24
9R9P|1|6|C|25
9R9P|1|6|G|26
9R9P|1|6|U|27
*
9R9P|1|6|A|43
9R9P|1|6|A|44
9R9P|1|6|G|45
9R9P|1|6|G|46
9R9P|1|6|U|47
9R9P|1|6|C|48
9R9P|1|6|G|49
*
9R9P|1|6|C|65
9R9P|1|6|C|66

Current chains

Chain 6

tRNA Methionin elongator

Nearby chains

Chain C1

Large subunit ribosomal RNA; LSU rRNA

Chain LI

60S ribosomal protein L10