J4_9R9P_012
3D structure
- PDB id
- 9R9P (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Yeast 80S with nascent chain in complex with Ssb1-ADP in the S2 state
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3 Å
Loop
- Sequence
- AAG*CGAAAG*CCAUAAACUAUG*UU
- Length
- 23 nucleotides
- Bulged bases
- 9R9P|1|C2|A|623, 9R9P|1|C2|A|1026, 9R9P|1|C2|C|1028, 9R9P|1|C2|U|1029, 9R9P|1|C2|A|1030, 9R9P|1|C2|U|1031
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
9R9P|1|C2|A|622
9R9P|1|C2|A|623
9R9P|1|C2|G|624
*
9R9P|1|C2|C|975
9R9P|1|C2|G|976
9R9P|1|C2|A|977
9R9P|1|C2|A|978
9R9P|1|C2|A|979
9R9P|1|C2|G|980
*
9R9P|1|C2|C|1021
9R9P|1|C2|C|1022
9R9P|1|C2|A|1023
9R9P|1|C2|U|1024
9R9P|1|C2|A|1025
9R9P|1|C2|A|1026
9R9P|1|C2|A|1027
9R9P|1|C2|C|1028
9R9P|1|C2|U|1029
9R9P|1|C2|A|1030
9R9P|1|C2|U|1031
9R9P|1|C2|G|1032
*
9R9P|1|C2|U|1103
9R9P|1|C2|U|1104
Current chains
- Chain C2
- RNA (1642-MER)
Nearby chains
- Chain Ln
- Large ribosomal subunit protein eL41B
- Chain Lp
- 60S ribosomal protein L43-A
- Chain SL
- 40S ribosomal protein S11-A
- Chain SN
- 40S ribosomal protein S13
- Chain SO
- 40S ribosomal protein S14-A
- Chain SW
- 40S ribosomal protein S22-A
- Chain SX
- 40S ribosomal protein S23-A
- Chain Sa
- Small ribosomal subunit protein eS26A
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