J4_9RJA_001

3D structure

PDB id

9RJA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Manikomycin bound to the Escherichia coli 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.45 Å

Loop

Sequence

GAGUAAUG*UG*CUAG*CC

Length

16 nucleotides

Bulged bases

9RJA|1|A|U|121

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9RJA|1|A|G|115
9RJA|1|A|A|116
9RJA|1|A|G|117
9RJA|1|A|U|118
9RJA|1|A|A|119
9RJA|1|A|A|120
9RJA|1|A|U|121
9RJA|1|A|G|122
*
9RJA|1|A|U|239
9RJA|1|A|G|240
*
9RJA|1|A|C|286
9RJA|1|A|U|287
9RJA|1|A|A|288
9RJA|1|A|G|289
*
9RJA|1|A|C|311
9RJA|1|A|C|312

Current chains

Chain A

16S rRNA

Nearby chains

Chain P

30S ribosomal protein S16

Chain Q

Small ribosomal subunit protein uS17