J4_9RJA_004

3D structure

PDB id

9RJA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Manikomycin bound to the Escherichia coli 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.45 Å

Loop

Sequence

AUAG*CAG*CGUGUCC*GU

Length

16 nucleotides

Bulged bases

9RJA|1|Y|U|8, 9RJA|1|Y|U|47, 9RJA|1|Y|C|48

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_9RJA_004 not in the Motif Atlas

Homologous match to J4_1J1U_001

Geometric discrepancy: 0.2259

The information below is about J4_1J1U_001

Detailed Annotation

tRNA junction

Broad Annotation

No text annotation

Motif group

J4_95067.2

Basepair signature

cWW-F-cWW-cWW-cHS-F-cWW-cWW

Number of instances in this motif group

49

Unit IDs

9RJA|1|Y|A|7
9RJA|1|Y|U|8
9RJA|1|Y|A|9
9RJA|1|Y|G|10
*
9RJA|1|Y|C|25
9RJA|1|Y|A|26
9RJA|1|Y|G|27
*
9RJA|1|Y|C|43
9RJA|1|Y|G|44
9RJA|1|Y|U|45
9RJA|1|Y|G|46
9RJA|1|Y|U|47
9RJA|1|Y|C|48
9RJA|1|Y|C|49
*
9RJA|1|Y|G|65
9RJA|1|Y|U|66

Current chains

Chain Y

A-site Phe-tRNA

Nearby chains

Chain a

Large subunit ribosomal RNA; LSU rRNA