J4_9RJA_010

3D structure

PDB id

9RJA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Manikomycin bound to the Escherichia coli 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.45 Å

Loop

Sequence

GGUUC*GGUGAG*CU*AAUCGUAC

Length

21 nucleotides

Bulged bases

9RJA|1|a|G|1341

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9RJA|1|a|G|1310
9RJA|1|a|G|1311
9RJA|1|a|U|1312
9RJA|1|a|U|1313
9RJA|1|a|C|1314
*
9RJA|1|a|G|1338
9RJA|1|a|G|1339
9RJA|1|a|U|1340
9RJA|1|a|G|1341
9RJA|1|a|A|1342
9RJA|1|a|G|1343
*
9RJA|1|a|C|1404
9RJA|1|a|U|1405
*
9RJA|1|a|A|1597
9RJA|1|a|A|1598
9RJA|1|a|U|1599
9RJA|1|a|C|1600
9RJA|1|a|G|1601
9RJA|1|a|U|1602
9RJA|1|a|A|1603
9RJA|1|a|C|1604

Current chains

Chain a

23S rRNA

Nearby chains

Chain 1

Large ribosomal subunit protein bL34

Chain s

Large ribosomal subunit protein uL23