J4_9RPV_002
3D structure
- PDB id
- 9RPV (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the ZAK-bound human disome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.35 Å
Loop
- Sequence
- G(4SU)GG*CGU*AAG(G7M)UCG*CC
- Length
- 16 nucleotides
- Bulged bases
- 9RPV|1|B5|4SU|8
- QA status
- Modified nucleotides: 4SU, G7M
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_9RPV_002 not in the Motif Atlas
- Homologous match to J4_7VNV_001
- Geometric discrepancy: 0.1803
- The information below is about J4_7VNV_001
- Detailed Annotation
- tRNA junction
- Broad Annotation
- No text annotation
- Motif group
- J4_95067.1
- Basepair signature
- cWW-F-cWW-cWW-cHS-F-cWW-cWW
- Number of instances in this motif group
- 48
Unit IDs
9RPV|1|B5|G|7
9RPV|1|B5|4SU|8
9RPV|1|B5|G|9
9RPV|1|B5|G|10
*
9RPV|1|B5|C|26
9RPV|1|B5|G|27
9RPV|1|B5|U|28
*
9RPV|1|B5|A|44
9RPV|1|B5|A|45
9RPV|1|B5|G|46
9RPV|1|B5|G7M|47
9RPV|1|B5|U|48
9RPV|1|B5|C|49
9RPV|1|B5|G|50
*
9RPV|1|B5|C|66
9RPV|1|B5|C|67
Current chains
- Chain B5
- P-site tRNA of the stalled 80S
Nearby chains
- Chain M5
- Large subunit ribosomal RNA; LSU rRNA
- Chain MI
- 60S ribosomal protein L10
- Chain MJ
- 60S ribosomal protein L11
- Chain RS
- 40S ribosomal protein S18
- Chain RZ
- 40S ribosomal protein S25
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