J4_9RPV_003
3D structure
- PDB id
- 9RPV (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the ZAK-bound human disome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.35 Å
Loop
- Sequence
- GGAUAG*CAGG*CCGUGUCC*GUCC
- Length
- 22 nucleotides
- Bulged bases
- 9RPV|1|D4|U|8, 9RPV|1|D4|U|47, 9RPV|1|D4|C|48
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
9RPV|1|D4|G|5
9RPV|1|D4|G|6
9RPV|1|D4|A|7
9RPV|1|D4|U|8
9RPV|1|D4|A|9
9RPV|1|D4|G|10
*
9RPV|1|D4|C|25
9RPV|1|D4|A|26
9RPV|1|D4|G|27
9RPV|1|D4|G|28
*
9RPV|1|D4|C|42
9RPV|1|D4|C|43
9RPV|1|D4|G|44
9RPV|1|D4|U|45
9RPV|1|D4|G|46
9RPV|1|D4|U|47
9RPV|1|D4|C|48
9RPV|1|D4|C|49
*
9RPV|1|D4|G|65
9RPV|1|D4|U|66
9RPV|1|D4|C|67
9RPV|1|D4|C|68
Current chains
- Chain D4
- A/P tRNA on the collided 80S
Nearby chains
- Chain L5
- Large subunit ribosomal RNA; LSU rRNA
- Chain LI
- Ribosomal protein uL16-like
- Chain S2
- Small subunit ribosomal RNA; SSU rRNA
- Chain SP
- 40S ribosomal protein S15
- Chain Se
- Ubiquitin-like FUBI-ribosomal protein eS30 fusion protein
Coloring options: