J4_9RPV_004

3D structure

PDB id

9RPV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the ZAK-bound human disome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.35 Å

Loop

Sequence

AUAGCG*CACAU*AGACC*GU

Length

18 nucleotides

Bulged bases

9RPV|1|E5|U|8, 9RPV|1|E5|C|47

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9RPV|1|E5|A|7
9RPV|1|E5|U|8
9RPV|1|E5|A|9
9RPV|1|E5|G|10
9RPV|1|E5|C|11
9RPV|1|E5|G|12
*
9RPV|1|E5|C|23
9RPV|1|E5|A|24
9RPV|1|E5|C|25
9RPV|1|E5|A|26
9RPV|1|E5|U|27
*
9RPV|1|E5|A|44
9RPV|1|E5|G|45
9RPV|1|E5|A|46
9RPV|1|E5|C|47
9RPV|1|E5|C|48
*
9RPV|1|E5|G|64
9RPV|1|E5|U|65

Current chains

Chain E5

E-site tRNA of the stalled 80S

Nearby chains

Chain Mo

Large ribosomal subunit protein eL42

Chain RB

40S ribosomal protein S3a