J4_9RPV_013

3D structure

PDB id

9RPV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the ZAK-bound human disome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.35 Å

Loop

Sequence

CUG*CG*CUUAAGGUAG*UGAAUG

Length

21 nucleotides

Bulged bases

9RPV|1|L5|U|3818

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_9RPV_013 not in the Motif Atlas

Homologous match to J4_9H3G_008

Geometric discrepancy: 0.1544

The information below is about J4_9H3G_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_42306.3

Basepair signature

cWW-tSS-cSS-cWH-cWW-tWH-tHS-cWW-cWW-tWW-F-cSH-F-F

Number of instances in this motif group

5

Unit IDs

9RPV|1|L5|C|3696
9RPV|1|L5|U|3697
9RPV|1|L5|G|3698
*
9RPV|1|L5|C|3752
9RPV|1|L5|G|3753
*
9RPV|1|L5|C|3771
9RPV|1|L5|U|3772
9RPV|1|L5|U|3773
9RPV|1|L5|A|3774
9RPV|1|L5|A|3775
9RPV|1|L5|G|3776
9RPV|1|L5|G|3777
9RPV|1|L5|U|3778
9RPV|1|L5|A|3779
9RPV|1|L5|G|3780
*
9RPV|1|L5|U|3814
9RPV|1|L5|G|3815
9RPV|1|L5|A|3816
9RPV|1|L5|A|3817
9RPV|1|L5|U|3818
9RPV|1|L5|G|3819

Current chains

Chain L5

28S rRNA of the collided 80S

Nearby chains

Chain B4

Transfer RNA; tRNA

Chain LA

60S ribosomal protein L8

Chain Ln

60S ribosomal protein L41

Chain S2

Small subunit ribosomal RNA; SSU rRNA