J4_9RPV_016

3D structure

PDB id

9RPV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the ZAK-bound human disome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.35 Å

Loop

Sequence

CC*GAGUCG*CAAAGCG*UAAG

Length

19 nucleotides

Bulged bases

9RPV|1|M5|C|309

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9RPV|1|M5|C|111
9RPV|1|M5|C|112
*
9RPV|1|M5|G|278
9RPV|1|M5|A|279
9RPV|1|M5|G|280
9RPV|1|M5|U|281
9RPV|1|M5|C|282
9RPV|1|M5|G|283
*
9RPV|1|M5|C|304
9RPV|1|M5|A|305
9RPV|1|M5|A|306
9RPV|1|M5|A|307
9RPV|1|M5|G|308
9RPV|1|M5|C|309
9RPV|1|M5|G|310
*
9RPV|1|M5|U|327
9RPV|1|M5|A|328
9RPV|1|M5|A|329
9RPV|1|M5|G|330

Current chains

Chain M5

28S rRNA of the stalled 80S

Nearby chains

Chain ML

Large ribosomal subunit protein eL13

Chain MN

60S ribosomal protein L15

Chain Mh

60S ribosomal protein L35

Chain Mi

60S ribosomal protein L36