J4_9RPV_018

3D structure

PDB id

9RPV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the ZAK-bound human disome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.35 Å

Loop

Sequence

CUC*GCC*GCGC*GGAGCG

Length

16 nucleotides

Bulged bases

9RPV|1|M5|G|1271, 9RPV|1|M5|C|1272

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9RPV|1|M5|C|981
9RPV|1|M5|U|982
9RPV|1|M5|C|983
*
9RPV|1|M5|G|1070
9RPV|1|M5|C|1071
9RPV|1|M5|C|1072
*
9RPV|1|M5|G|1240
9RPV|1|M5|C|1241
9RPV|1|M5|G|1242
9RPV|1|M5|C|1243
*
9RPV|1|M5|G|1268
9RPV|1|M5|G|1269
9RPV|1|M5|A|1270
9RPV|1|M5|G|1271
9RPV|1|M5|C|1272
9RPV|1|M5|G|1273

Current chains

Chain M5

28S rRNA of the stalled 80S

Nearby chains

Chain ME

Large ribosomal subunit protein eL6

Chain MF

Large ribosomal subunit protein uL30

Chain Mb

Large ribosomal subunit protein eL29