J4_9RPV_023

3D structure

PDB id

9RPV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the ZAK-bound human disome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.35 Å

Loop

Sequence

GG*UGUGAA*UGGAAAG*UC

Length

17 nucleotides

Bulged bases

9RPV|1|M5|A|2696

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9RPV|1|M5|G|2618
9RPV|1|M5|G|2619
*
9RPV|1|M5|U|2637
9RPV|1|M5|G|2638
9RPV|1|M5|U|2639
9RPV|1|M5|G|2640
9RPV|1|M5|A|2641
9RPV|1|M5|A|2642
*
9RPV|1|M5|U|2692
9RPV|1|M5|G|2693
9RPV|1|M5|G|2694
9RPV|1|M5|A|2695
9RPV|1|M5|A|2696
9RPV|1|M5|A|2697
9RPV|1|M5|G|2698
*
9RPV|1|M5|U|2718
9RPV|1|M5|C|2719

Current chains

Chain M5

28S rRNA of the stalled 80S

Nearby chains

Chain MR

60S ribosomal protein L19

Chain MU

60S ribosomal protein L22

Chain Mg

60S ribosomal protein L34

Chain Mk

60S ribosomal protein L38