J4_9RPV_026

3D structure

PDB id

9RPV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the ZAK-bound human disome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.35 Å

Loop

Sequence

CUAAG*UUG*CC*GGG

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9RPV|1|M5|C|4231
9RPV|1|M5|U|4232
9RPV|1|M5|A|4233
9RPV|1|M5|A|4234
9RPV|1|M5|G|4235
*
9RPV|1|M5|U|4289
9RPV|1|M5|U|4290
9RPV|1|M5|G|4291
*
9RPV|1|M5|C|4318
9RPV|1|M5|C|4319
*
9RPV|1|M5|G|4328
9RPV|1|M5|G|4329
9RPV|1|M5|G|4330

Current chains

Chain M5

28S rRNA of the stalled 80S

Nearby chains

Chain MD

60S ribosomal protein L5

Chain MT

60S ribosomal protein L21

Chain Mo

Large ribosomal subunit protein eL42