J4_9RTU_015

3D structure

PDB id

9RTU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 70S-EF-G(P610L)-GDP-Pi ribosome complex with tRNAs in hybrid state 1 (H1-EF-G(P610L)-GDP-Pi)

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

A(4SU)AG*CAG*CGU(G7M)UCC*GU

Length

16 nucleotides

Bulged bases

9RTU|1|w|4SU|8, 9RTU|1|w|U|47, 9RTU|1|w|C|48

QA status

Modified nucleotides: 4SU, G7M

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9RTU|1|w|A|7
9RTU|1|w|4SU|8
9RTU|1|w|A|9
9RTU|1|w|G|10
*
9RTU|1|w|C|25
9RTU|1|w|A|26
9RTU|1|w|G|27
*
9RTU|1|w|C|43
9RTU|1|w|G|44
9RTU|1|w|U|45
9RTU|1|w|G7M|46
9RTU|1|w|U|47
9RTU|1|w|C|48
9RTU|1|w|C|49
*
9RTU|1|w|G|65
9RTU|1|w|U|66

Current chains

Chain w

A/P-site tRNA(Phe)

Nearby chains

Chain A

Large subunit ribosomal RNA; LSU rRNA

Chain x

Elongation factor G