J4_9RTV_015
3D structure
- PDB id
- 9RTV (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the 70S-EF-G(P610L)-GDP-Pi ribosome complex with tRNAs in hybrid state 2 (H2-EF-G(P610L)-GDP-Pi)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.6 Å
Loop
- Sequence
- A(4SU)AG*CAG*CGU(G7M)UCC*GU
- Length
- 16 nucleotides
- Bulged bases
- 9RTV|1|w|4SU|8, 9RTV|1|w|U|47, 9RTV|1|w|C|48
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_9RTV_015 not in the Motif Atlas
- Homologous match to J4_1GAX_004
- Geometric discrepancy: 0.2645
- The information below is about J4_1GAX_004
- Detailed Annotation
- tRNA junction
- Broad Annotation
- No text annotation
- Motif group
- J4_70449.29
- Basepair signature
- cWW-F-cWW-cWW-cHS-F-cWW-cWW
- Number of instances in this motif group
- 54
Unit IDs
9RTV|1|w|A|7
9RTV|1|w|4SU|8
9RTV|1|w|A|9
9RTV|1|w|G|10
*
9RTV|1|w|C|25
9RTV|1|w|A|26
9RTV|1|w|G|27
*
9RTV|1|w|C|43
9RTV|1|w|G|44
9RTV|1|w|U|45
9RTV|1|w|G7M|46
9RTV|1|w|U|47
9RTV|1|w|C|48
9RTV|1|w|C|49
*
9RTV|1|w|G|65
9RTV|1|w|U|66
Current chains
- Chain w
- A/P-site tRNA(Phe)
Nearby chains
- Chain A
- Large subunit ribosomal RNA; LSU rRNA
- Chain M
- 50S ribosomal protein L16
- Chain a
- Small subunit ribosomal RNA; SSU rRNA
- Chain x
- Elongation factor G
Coloring options: