J4_9RU8_013

3D structure

PDB id

9RU8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

WT-HEK 80S ribosome bound to TISU mRNA (WT-TISU)

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

G(4SU)GG*CGU*AAG(G7M)UCG*CC

Length

16 nucleotides

Bulged bases

9RU8|1|Pt|4SU|8, 9RU8|1|Pt|U|48, 9RU8|1|Pt|C|49

QA status

Modified nucleotides: 4SU, G7M

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_9RU8_013 not in the Motif Atlas

Homologous match to J4_5AXM_001

Geometric discrepancy: 0.2124

The information below is about J4_5AXM_001

Detailed Annotation

tRNA junction

Broad Annotation

No text annotation

Motif group

J4_95067.2

Basepair signature

cWW-F-cWW-cWW-cHS-F-cWW-cWW

Number of instances in this motif group

49

Unit IDs

9RU8|1|Pt|G|7
9RU8|1|Pt|4SU|8
9RU8|1|Pt|G|9
9RU8|1|Pt|G|10
*
9RU8|1|Pt|C|26
9RU8|1|Pt|G|27
9RU8|1|Pt|U|28
*
9RU8|1|Pt|A|44
9RU8|1|Pt|A|45
9RU8|1|Pt|G|46
9RU8|1|Pt|G7M|47
9RU8|1|Pt|U|48
9RU8|1|Pt|C|49
9RU8|1|Pt|G|50
*
9RU8|1|Pt|C|66
9RU8|1|Pt|C|67

Current chains

Chain Pt

P site tRNA

Nearby chains

Chain L5

Large subunit ribosomal RNA; LSU rRNA

Chain LI

60S ribosomal protein L10