J4_9RU9_003

3D structure

PDB id

9RU9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

RPS26dC HEK mutant 80S ribosome bound to Kozak mRNA (RPS26dC-Kozak)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.97 Å

Loop

Sequence

CUC*GCC*GCGC*GGAGCG

Length

16 nucleotides

Bulged bases

9RU9|1|L5|G|1271, 9RU9|1|L5|C|1272

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9RU9|1|L5|C|981
9RU9|1|L5|U|982
9RU9|1|L5|C|983
*
9RU9|1|L5|G|1070
9RU9|1|L5|C|1071
9RU9|1|L5|C|1072
*
9RU9|1|L5|G|1240
9RU9|1|L5|C|1241
9RU9|1|L5|G|1242
9RU9|1|L5|C|1243
*
9RU9|1|L5|G|1268
9RU9|1|L5|G|1269
9RU9|1|L5|A|1270
9RU9|1|L5|G|1271
9RU9|1|L5|C|1272
9RU9|1|L5|G|1273

Current chains

Chain L5

23S rRNA

Nearby chains

Chain LE

Large ribosomal subunit protein eL6

Chain LF

Large ribosomal subunit protein uL30

Chain Lb

Large ribosomal subunit protein eL29