J4_9RU9_007
3D structure
- PDB id
- 9RU9 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- RPS26dC HEK mutant 80S ribosome bound to Kozak mRNA (RPS26dC-Kozak)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.97 Å
Loop
- Sequence
- AGAUGG*CGUUC*GAAGGG*CGGCCGA(PSU)
- Length
- 25 nucleotides
- Bulged bases
- 9RU9|1|L5|A|2472, 9RU9|1|L5|G|2475, 9RU9|1|L5|G|2503, 9RU9|1|L5|C|2504
- QA status
- Modified nucleotides: PSU
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
9RU9|1|L5|A|2451
9RU9|1|L5|G|2452
9RU9|1|L5|A|2453
9RU9|1|L5|U|2454
9RU9|1|L5|G|2455
9RU9|1|L5|G|2456
*
9RU9|1|L5|C|2465
9RU9|1|L5|G|2466
9RU9|1|L5|U|2467
9RU9|1|L5|U|2468
9RU9|1|L5|C|2469
*
9RU9|1|L5|G|2471
9RU9|1|L5|A|2472
9RU9|1|L5|A|2473
9RU9|1|L5|G|2474
9RU9|1|L5|G|2475
9RU9|1|L5|G|2476
*
9RU9|1|L5|C|2501
9RU9|1|L5|G|2502
9RU9|1|L5|G|2503
9RU9|1|L5|C|2504
9RU9|1|L5|C|2505
9RU9|1|L5|G|2506
9RU9|1|L5|A|2507
9RU9|1|L5|PSU|2508
Current chains
- Chain L5
- 23S rRNA
Nearby chains
- Chain L8
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain LA
- Large ribosomal subunit protein uL2
- Chain LG
- 60S ribosomal protein L7a
- Chain LN
- 60S ribosomal protein L15
- Chain LX
- 60S ribosomal protein L23a
- Chain Lj
- Large ribosomal subunit protein eL37
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