J4_9RU9_008

3D structure

PDB id

9RU9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

RPS26dC HEK mutant 80S ribosome bound to Kozak mRNA (RPS26dC-Kozak)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.97 Å

Loop

Sequence

GG*UGUGAA*UGGAAAG*UC

Length

17 nucleotides

Bulged bases

9RU9|1|L5|A|2696

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9RU9|1|L5|G|2618
9RU9|1|L5|G|2619
*
9RU9|1|L5|U|2637
9RU9|1|L5|G|2638
9RU9|1|L5|U|2639
9RU9|1|L5|G|2640
9RU9|1|L5|A|2641
9RU9|1|L5|A|2642
*
9RU9|1|L5|U|2692
9RU9|1|L5|G|2693
9RU9|1|L5|G|2694
9RU9|1|L5|A|2695
9RU9|1|L5|A|2696
9RU9|1|L5|A|2697
9RU9|1|L5|G|2698
*
9RU9|1|L5|U|2718
9RU9|1|L5|C|2719

Current chains

Chain L5

23S rRNA

Nearby chains

Chain LR

60S ribosomal protein L19

Chain LU

60S ribosomal protein L22

Chain Lg

60S ribosomal protein L34

Chain Lk

60S ribosomal protein L38