J4_9RUA_008

3D structure

PDB id

9RUA (explore in PDB, NAKB, or RNA 3D Hub)

Description

RPS26dC HEK mutant 80S ribosome bound to TISU mRNA (RPS26dC-TISU)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CGAC(PSU)G*CAAAG*UGAUU*AUGA(A2M)CG

Length

23 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: PSU, A2M

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9RUA|1|L5|C|3633
9RUA|1|L5|G|3634
9RUA|1|L5|A|3635
9RUA|1|L5|C|3636
9RUA|1|L5|PSU|3637
9RUA|1|L5|G|3638
*
9RUA|1|L5|C|3650
9RUA|1|L5|A|3651
9RUA|1|L5|A|3652
9RUA|1|L5|A|3653
9RUA|1|L5|G|3654
*
9RUA|1|L5|U|3690
9RUA|1|L5|G|3691
9RUA|1|L5|A|3692
9RUA|1|L5|U|3693
9RUA|1|L5|U|3694
*
9RUA|1|L5|A|3821
9RUA|1|L5|U|3822
9RUA|1|L5|G|3823
9RUA|1|L5|A|3824
9RUA|1|L5|A2M|3825
9RUA|1|L5|C|3826
9RUA|1|L5|G|3827

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LA

Large ribosomal subunit protein uL2

Chain Ln

Ribosomal protein L41

Chain Lp

60S ribosomal protein L37a

Chain S2

Small subunit ribosomal RNA; SSU rRNA