J4_9S7C_004

3D structure

PDB id

9S7C (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of human mitochondrial COX1-translating ribosome nascent chain complex with tRNAs in initial hybrid state (H1)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CUG*CC*GCAAAGGUAG*UGAAUG

Length

21 nucleotides

Bulged bases

9S7C|1|A|U|2634

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_9S7C_004 not in the Motif Atlas

Homologous match to J4_8B0X_012

Geometric discrepancy: 0.1494

The information below is about J4_8B0X_012

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_42306.3

Basepair signature

cWW-tSS-cSS-cWH-cWW-tWH-tHS-cWW-cWW-tWW-F-cSH-F-F

Number of instances in this motif group

5

Unit IDs

9S7C|1|A|C|2544
9S7C|1|A|U|2545
9S7C|1|A|G|2546
*
9S7C|1|A|C|2569
9S7C|1|A|C|2570
*
9S7C|1|A|G|2587
9S7C|1|A|C|2588
9S7C|1|A|A|2589
9S7C|1|A|A|2590
9S7C|1|A|A|2591
9S7C|1|A|G|2592
9S7C|1|A|G|2593
9S7C|1|A|U|2594
9S7C|1|A|A|2595
9S7C|1|A|G|2596
*
9S7C|1|A|U|2630
9S7C|1|A|G|2631
9S7C|1|A|A|2632
9S7C|1|A|A|2633
9S7C|1|A|U|2634
9S7C|1|A|G|2635

Current chains

Chain A

16S mitochondrial rRNA

Nearby chains

Chain A3

Small ribosomal subunit protein bS22, mitochondrial

Chain AA

Small subunit ribosomal RNA; SSU rRNA

Chain Ax

Transfer RNA; tRNA

Chain D

Large ribosomal subunit protein uL2m