J4_9SLG_008

3D structure

PDB id

9SLG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Doxycycline Bound E. coli Ribosome with Rearranged Peptidyl Transferase Centre

Experimental method

ELECTRON MICROSCOPY

Resolution

2.16 Å

Loop

Sequence

GGUUC*GGUGAG*CU*AAUCGUAC

Length

21 nucleotides

Bulged bases

9SLG|1|a|G|1343

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9SLG|1|a|G|1312
9SLG|1|a|G|1313
9SLG|1|a|U|1314
9SLG|1|a|U|1315
9SLG|1|a|C|1316
*
9SLG|1|a|G|1340
9SLG|1|a|G|1341
9SLG|1|a|U|1342
9SLG|1|a|G|1343
9SLG|1|a|A|1344
9SLG|1|a|G|1345
*
9SLG|1|a|C|1406
9SLG|1|a|U|1407
*
9SLG|1|a|A|1599
9SLG|1|a|A|1600
9SLG|1|a|U|1601
9SLG|1|a|C|1602
9SLG|1|a|G|1603
9SLG|1|a|U|1604
9SLG|1|a|A|1605
9SLG|1|a|C|1606

Current chains

Chain a

23S ribosomal RNA

Nearby chains

Chain 1

Large ribosomal subunit protein bL34

Chain s

Large ribosomal subunit protein uL23