J4_9SLG_012
3D structure
- PDB id
- 9SLG (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Doxycycline Bound E. coli Ribosome with Rearranged Peptidyl Transferase Centre
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.16 Å
Loop
- Sequence
- CU(2MG)*CG*CCUAAGGUAG*CGAAUG
- Length
- 21 nucleotides
- Bulged bases
- 9SLG|1|a|U|1975
- QA status
- Modified nucleotides: 2MG
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_9SLG_012 not in the Motif Atlas
- Homologous match to J4_8B0X_012
- Geometric discrepancy: 0.06
- The information below is about J4_8B0X_012
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_42306.3
- Basepair signature
- cWW-tSS-cSS-cWH-cWW-tWH-tHS-cWW-cWW-tWW-F-cSH-F-F
- Number of instances in this motif group
- 5
Unit IDs
9SLG|1|a|C|1835
9SLG|1|a|U|1836
9SLG|1|a|2MG|1837
*
9SLG|1|a|C|1909
9SLG|1|a|G|1910
*
9SLG|1|a|C|1928
9SLG|1|a|C|1929
9SLG|1|a|U|1930
9SLG|1|a|A|1931
9SLG|1|a|A|1932
9SLG|1|a|G|1933
9SLG|1|a|G|1934
9SLG|1|a|U|1935
9SLG|1|a|A|1936
9SLG|1|a|G|1937
*
9SLG|1|a|C|1971
9SLG|1|a|G|1972
9SLG|1|a|A|1973
9SLG|1|a|A|1974
9SLG|1|a|U|1975
9SLG|1|a|G|1976
Current chains
- Chain a
- 23S ribosomal RNA
Nearby chains
- Chain A
- Small subunit ribosomal RNA; SSU rRNA
- Chain c
- Large ribosomal subunit protein uL2
Coloring options: