J4_9SPF_002

3D structure

PDB id

9SPF (explore in PDB, NAKB, or RNA 3D Hub)

Description

CRYO-EM STRUCTURE OF HUMAN 80S RIBOSOME WITH A/P/E-SITE TRNA AND MRNA CONTAINING N1-METHYLPSEUDOURIDINE

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

CC*GAGUCG*CAAAGCG*UAAG

Length

19 nucleotides

Bulged bases

9SPF|1|L5|C|309

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9SPF|1|L5|C|111
9SPF|1|L5|C|112
*
9SPF|1|L5|G|278
9SPF|1|L5|A|279
9SPF|1|L5|G|280
9SPF|1|L5|U|281
9SPF|1|L5|C|282
9SPF|1|L5|G|283
*
9SPF|1|L5|C|304
9SPF|1|L5|A|305
9SPF|1|L5|A|306
9SPF|1|L5|A|307
9SPF|1|L5|G|308
9SPF|1|L5|C|309
9SPF|1|L5|G|310
*
9SPF|1|L5|U|327
9SPF|1|L5|A|328
9SPF|1|L5|A|329
9SPF|1|L5|G|330

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LL

Large ribosomal subunit protein eL13

Chain LN

60S ribosomal protein L15

Chain Lh

60S ribosomal protein L35

Chain Li

60S ribosomal protein L36