J4_9SPF_003

3D structure

PDB id

9SPF (explore in PDB, NAKB, or RNA 3D Hub)

Description

CRYO-EM STRUCTURE OF HUMAN 80S RIBOSOME WITH A/P/E-SITE TRNA AND MRNA CONTAINING N1-METHYLPSEUDOURIDINE

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

CAAG*CCCAGCCC*GAC*GGUAG

Length

20 nucleotides

Bulged bases

9SPF|1|L5|G|219

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9SPF|1|L5|C|196
9SPF|1|L5|A|197
9SPF|1|L5|A|198
9SPF|1|L5|G|199
*
9SPF|1|L5|C|215
9SPF|1|L5|C|216
9SPF|1|L5|C|217
9SPF|1|L5|A|218
9SPF|1|L5|G|219
9SPF|1|L5|C|220
9SPF|1|L5|C|221
9SPF|1|L5|C|222
*
9SPF|1|L5|G|226
9SPF|1|L5|A|227
9SPF|1|L5|C|228
*
9SPF|1|L5|G|240
9SPF|1|L5|G|241
9SPF|1|L5|U|242
9SPF|1|L5|A|243
9SPF|1|L5|G|244

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LC

60S ribosomal protein L4

Chain LY

60S ribosomal protein L26