J4_9SPF_004

3D structure

PDB id

9SPF (explore in PDB, NAKB, or RNA 3D Hub)

Description

CRYO-EM STRUCTURE OF HUMAN 80S RIBOSOME WITH A/P/E-SITE TRNA AND MRNA CONTAINING N1-METHYLPSEUDOURIDINE

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

CUC*GCC*GCGC*GGAGCG

Length

16 nucleotides

Bulged bases

9SPF|1|L5|G|1271, 9SPF|1|L5|C|1272

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9SPF|1|L5|C|981
9SPF|1|L5|U|982
9SPF|1|L5|C|983
*
9SPF|1|L5|G|1070
9SPF|1|L5|C|1071
9SPF|1|L5|C|1072
*
9SPF|1|L5|G|1240
9SPF|1|L5|C|1241
9SPF|1|L5|G|1242
9SPF|1|L5|C|1243
*
9SPF|1|L5|G|1268
9SPF|1|L5|G|1269
9SPF|1|L5|A|1270
9SPF|1|L5|G|1271
9SPF|1|L5|C|1272
9SPF|1|L5|G|1273

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LE

Large ribosomal subunit protein eL6

Chain LF

Large ribosomal subunit protein uL30

Chain Lb

Large ribosomal subunit protein eL29