J4_9SPI_001

3D structure

PDB id

9SPI (explore in PDB, NAKB, or RNA 3D Hub)

Description

CRYO-EM STRUCTURE OF HUMAN 80S RIBOSOME WITH A/P/E-SITE TRNA AND MRNA CONTAINING URIDINE

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

UUAG*CGU*AAGGUCG*UA

Length

16 nucleotides

Bulged bases

9SPI|1|At|U|8, 9SPI|1|At|U|47, 9SPI|1|At|C|48

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_9SPI_001 not in the Motif Atlas

Homologous match to J4_6CFJ_015

Geometric discrepancy: 0.2126

The information below is about J4_6CFJ_015

Detailed Annotation

tRNA junction

Broad Annotation

No text annotation

Motif group

J4_95067.1

Basepair signature

cWW-F-cWW-cWW-cHS-F-cWW-cWW

Number of instances in this motif group

48

Unit IDs

9SPI|1|At|U|7
9SPI|1|At|U|8
9SPI|1|At|A|9
9SPI|1|At|G|10
*
9SPI|1|At|C|25
9SPI|1|At|G|26
9SPI|1|At|U|27
*
9SPI|1|At|A|43
9SPI|1|At|A|44
9SPI|1|At|G|45
9SPI|1|At|G|46
9SPI|1|At|U|47
9SPI|1|At|C|48
9SPI|1|At|G|49
*
9SPI|1|At|U|65
9SPI|1|At|A|66

Current chains

Chain At

tRNA-Ile-AAT-9-1

Nearby chains

Chain L5

Large subunit ribosomal RNA; LSU rRNA

Chain Se

Ubiquitin-like FUBI-ribosomal protein eS30 fusion protein