J4_9SPI_004

3D structure

PDB id

9SPI (explore in PDB, NAKB, or RNA 3D Hub)

Description

CRYO-EM STRUCTURE OF HUMAN 80S RIBOSOME WITH A/P/E-SITE TRNA AND MRNA CONTAINING URIDINE

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

CUC*GCC*GCGC*GGAGCG

Length

16 nucleotides

Bulged bases

9SPI|1|L5|G|1271, 9SPI|1|L5|C|1272

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9SPI|1|L5|C|981
9SPI|1|L5|U|982
9SPI|1|L5|C|983
*
9SPI|1|L5|G|1070
9SPI|1|L5|C|1071
9SPI|1|L5|C|1072
*
9SPI|1|L5|G|1240
9SPI|1|L5|C|1241
9SPI|1|L5|G|1242
9SPI|1|L5|C|1243
*
9SPI|1|L5|G|1268
9SPI|1|L5|G|1269
9SPI|1|L5|A|1270
9SPI|1|L5|G|1271
9SPI|1|L5|C|1272
9SPI|1|L5|G|1273

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LE

Large ribosomal subunit protein eL6

Chain LF

Large ribosomal subunit protein uL30

Chain Lb

Large ribosomal subunit protein eL29