J4_9SRA_003
3D structure
- PDB id
- 9SRA (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of P. abyssi HibA:ribosome with an SD:antiSD duplex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.2 Å
Loop
- Sequence
- GGUUC*GGUUAG*C(4AC)*GAC(4AC)GUAC
- Length
- 21 nucleotides
- Bulged bases
- 9SRA|1|1|U|1601
- QA status
- Modified nucleotides: 4AC
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
9SRA|1|1|G|1569
9SRA|1|1|G|1570
9SRA|1|1|U|1571
9SRA|1|1|U|1572
9SRA|1|1|C|1573
*
9SRA|1|1|G|1598
9SRA|1|1|G|1599
9SRA|1|1|U|1600
9SRA|1|1|U|1601
9SRA|1|1|A|1602
9SRA|1|1|G|1603
*
9SRA|1|1|C|1666
9SRA|1|1|4AC|1667
*
9SRA|1|1|G|1870
9SRA|1|1|A|1871
9SRA|1|1|C|1872
9SRA|1|1|4AC|1873
9SRA|1|1|G|1874
9SRA|1|1|U|1875
9SRA|1|1|A|1876
9SRA|1|1|C|1877
Current chains
- Chain 1
- rRNA 23S
Nearby chains
- Chain BQ
- Large ribosomal subunit protein eL19
- Chain BT
- Large ribosomal subunit protein uL23
- Chain BW
- Large ribosomal subunit protein uL29
- Chain Bd
- Large ribosomal subunit protein eL34
- Chain Be
- Large ribosomal subunit protein eL37
- Chain Bf
- Large ribosomal subunit protein eL39
Coloring options: