J4_9SRA_011

3D structure

PDB id

9SRA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of P. abyssi HibA:ribosome with an SD:antiSD duplex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.2 Å

Loop

Sequence

GAG*CAUAG*CGAAAGG*CGC

Length

18 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9SRA|1|2|G|139
9SRA|1|2|A|140
9SRA|1|2|G|141
*
9SRA|1|2|C|175
9SRA|1|2|A|176
9SRA|1|2|U|177
9SRA|1|2|A|178
9SRA|1|2|G|179
*
9SRA|1|2|C|207
9SRA|1|2|G|208
9SRA|1|2|A|209
9SRA|1|2|A|210
9SRA|1|2|A|211
9SRA|1|2|G|212
9SRA|1|2|G|213
*
9SRA|1|2|C|228
9SRA|1|2|G|229
9SRA|1|2|C|230

Current chains

Chain 2

rRNA 16S

Nearby chains

Chain AE

30S ribosomal protein S4e

Chain AJ

30S ribosomal protein S8e