J4_9SRA_012

3D structure

PDB id

9SRA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of P. abyssi HibA:ribosome with an SD:antiSD duplex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.2 Å

Loop

Sequence

GCG*(4AC)GAAG*UGUAAAGGA(OMU)G*C(4AC)

Length

21 nucleotides

Bulged bases

9SRA|1|2|C|542, 9SRA|1|2|A|782

QA status

Modified nucleotides: 4AC, OMU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9SRA|1|2|G|541
9SRA|1|2|C|542
9SRA|1|2|G|543
*
9SRA|1|2|4AC|731
9SRA|1|2|G|732
9SRA|1|2|A|733
9SRA|1|2|A|734
9SRA|1|2|G|735
*
9SRA|1|2|U|778
9SRA|1|2|G|779
9SRA|1|2|U|780
9SRA|1|2|A|781
9SRA|1|2|A|782
9SRA|1|2|A|783
9SRA|1|2|G|784
9SRA|1|2|G|785
9SRA|1|2|A|786
9SRA|1|2|OMU|787
9SRA|1|2|G|788
*
9SRA|1|2|C|850
9SRA|1|2|4AC|851

Current chains

Chain 2

rRNA 16S

Nearby chains

Chain A0

eS32

Chain AI

30S ribosomal protein S8

Chain AM

30S ribosomal protein S11

Chain AN

30S ribosomal protein S12

Chain AQ

30S ribosomal protein S15

Chain AR

30S ribosomal protein S17