J4_9SRB_010

3D structure

PDB id

9SRB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of P. abyssi 70S ribosome in complex with hibernation factor HibA and SBDS

Experimental method

ELECTRON MICROSCOPY

Resolution

2.3 Å

Loop

Sequence

CAGUAACAC*GGC*GUAC*GG

Length

18 nucleotides

Bulged bases

9SRB|1|2|C|117

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9SRB|1|2|C|111
9SRB|1|2|A|112
9SRB|1|2|G|113
9SRB|1|2|U|114
9SRB|1|2|A|115
9SRB|1|2|A|116
9SRB|1|2|C|117
9SRB|1|2|A|118
9SRB|1|2|C|119
*
9SRB|1|2|G|247
9SRB|1|2|G|248
9SRB|1|2|C|249
*
9SRB|1|2|G|295
9SRB|1|2|U|296
9SRB|1|2|A|297
9SRB|1|2|C|298
*
9SRB|1|2|G|320
9SRB|1|2|G|321

Current chains

Chain 2

rRNA 16S

Nearby chains

Chain AE

30S ribosomal protein S4e

Chain AJ

30S ribosomal protein S8e

Chain AN

30S ribosomal protein S12

Chain AR

Small ribosomal subunit protein uS17