J4_9SRB_011

3D structure

PDB id

9SRB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of P. abyssi 70S ribosome in complex with hibernation factor HibA and SBDS

Experimental method

ELECTRON MICROSCOPY

Resolution

2.3 Å

Loop

Sequence

GAG*CAUAG*CGAAAGG*CGC

Length

18 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9SRB|1|2|G|139
9SRB|1|2|A|140
9SRB|1|2|G|141
*
9SRB|1|2|C|175
9SRB|1|2|A|176
9SRB|1|2|U|177
9SRB|1|2|A|178
9SRB|1|2|G|179
*
9SRB|1|2|C|207
9SRB|1|2|G|208
9SRB|1|2|A|209
9SRB|1|2|A|210
9SRB|1|2|A|211
9SRB|1|2|G|212
9SRB|1|2|G|213
*
9SRB|1|2|C|228
9SRB|1|2|G|229
9SRB|1|2|C|230

Current chains

Chain 2

rRNA 16S

Nearby chains

Chain AE

30S ribosomal protein S4e

Chain AJ

30S ribosomal protein S8e