J4_9SRB_012
3D structure
- PDB id
- 9SRB (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of P. abyssi 70S ribosome in complex with hibernation factor HibA and SBDS
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.3 Å
Loop
- Sequence
- GCG*(4AC)GAAG*UGUAAAGGA(OMU)G*C(4AC)
- Length
- 21 nucleotides
- Bulged bases
- 9SRB|1|2|C|542, 9SRB|1|2|A|782
- QA status
- Modified nucleotides: 4AC, OMU
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
9SRB|1|2|G|541
9SRB|1|2|C|542
9SRB|1|2|G|543
*
9SRB|1|2|4AC|731
9SRB|1|2|G|732
9SRB|1|2|A|733
9SRB|1|2|A|734
9SRB|1|2|G|735
*
9SRB|1|2|U|778
9SRB|1|2|G|779
9SRB|1|2|U|780
9SRB|1|2|A|781
9SRB|1|2|A|782
9SRB|1|2|A|783
9SRB|1|2|G|784
9SRB|1|2|G|785
9SRB|1|2|A|786
9SRB|1|2|OMU|787
9SRB|1|2|G|788
*
9SRB|1|2|C|850
9SRB|1|2|4AC|851
Current chains
- Chain 2
- rRNA 16S
Nearby chains
- Chain A0
- Small ribosomal subunit protein eS32
- Chain AI
- 30S ribosomal protein S8
- Chain AM
- 30S ribosomal protein S11
- Chain AN
- 30S ribosomal protein S12
- Chain AQ
- 30S ribosomal protein S15
- Chain AR
- Small ribosomal subunit protein uS17
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