J4_9SRC_001

3D structure

PDB id

9SRC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of P. abyssi 70S ribosome in complex with hibernation factor HibA in PTC conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

2.1 Å

Loop

Sequence

GCAAAC*GGGUUG*CUG*CAAC

Length

19 nucleotides

Bulged bases

9SRC|1|1|U|559

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9SRC|1|1|G|372
9SRC|1|1|C|373
9SRC|1|1|A|374
9SRC|1|1|A|375
9SRC|1|1|A|376
9SRC|1|1|C|377
*
9SRC|1|1|G|411
9SRC|1|1|G|412
9SRC|1|1|G|413
9SRC|1|1|U|414
9SRC|1|1|U|415
9SRC|1|1|G|416
*
9SRC|1|1|C|558
9SRC|1|1|U|559
9SRC|1|1|G|560
*
9SRC|1|1|C|576
9SRC|1|1|A|577
9SRC|1|1|A|578
9SRC|1|1|C|579

Current chains

Chain 1

rRNA 23S

Nearby chains

Chain BG

50S ribosomal protein L7Ae

Chain BM

Large ribosomal subunit protein eL15

Chain Bk

C2H2-type domain-containing protein