J4_9SRC_004
3D structure
- PDB id
- 9SRC (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of P. abyssi 70S ribosome in complex with hibernation factor HibA in PTC conformation
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.1 Å
Loop
- Sequence
- UC*GGUUAG*C(4AC)*GAC(4AC)GUA
- Length
- 17 nucleotides
- Bulged bases
- 9SRC|1|1|U|1601
- QA status
- Modified nucleotides: 4AC
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_9SRC_004 not in the Motif Atlas
- Homologous match to J4_4V9F_005
- Geometric discrepancy: 0.088
- The information below is about J4_4V9F_005
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_48150.2
- Basepair signature
- cWW-cWW-tHW-F-F-F-F-F-F-cWW-cWW
- Number of instances in this motif group
- 9
Unit IDs
9SRC|1|1|U|1572
9SRC|1|1|C|1573
*
9SRC|1|1|G|1598
9SRC|1|1|G|1599
9SRC|1|1|U|1600
9SRC|1|1|U|1601
9SRC|1|1|A|1602
9SRC|1|1|G|1603
*
9SRC|1|1|C|1666
9SRC|1|1|4AC|1667
*
9SRC|1|1|G|1870
9SRC|1|1|A|1871
9SRC|1|1|C|1872
9SRC|1|1|4AC|1873
9SRC|1|1|G|1874
9SRC|1|1|U|1875
9SRC|1|1|A|1876
Current chains
- Chain 1
- rRNA 23S
Nearby chains
- Chain BQ
- Large ribosomal subunit protein eL19
- Chain BT
- Large ribosomal subunit protein uL23
- Chain BW
- Large ribosomal subunit protein uL29
- Chain Bd
- Large ribosomal subunit protein eL34
- Chain Bf
- Large ribosomal subunit protein eL39
Coloring options: