J4_9SRC_009

3D structure

PDB id

9SRC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of P. abyssi 70S ribosome in complex with hibernation factor HibA in PTC conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

2.1 Å

Loop

Sequence

GAAG*(4AC)G*CAG*CC

Length

11 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: 4AC

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9SRC|1|1|G|2875
9SRC|1|1|A|2876
9SRC|1|1|A|2877
9SRC|1|1|G|2878
*
9SRC|1|1|4AC|2908
9SRC|1|1|G|2909
*
9SRC|1|1|C|2962
9SRC|1|1|A|2963
9SRC|1|1|G|2964
*
9SRC|1|1|C|3000
9SRC|1|1|C|3001

Current chains

Chain 1

rRNA 23S

Nearby chains

Chain BC

Large ribosomal subunit protein uL3

Chain BI

Large ribosomal subunit protein uL13

Chain BJ

Large ribosomal subunit protein uL14